Package index • taxify

All functions

add_algae_traits(): Add macroalgal functional traits (AlgaeTraits)
add_alien_first_records(): Add alien species first record years
add_amphibio(): Add amphibian life-history traits (AmphiBIO)
add_anage(): Add longevity and life-history traits (AnAge)
add_animaltraits(): Add cross-taxon body mass and metabolic rate (AnimalTraits)
add_arthropod_traits(): Add arthropod life-history traits (NW European Arthropods)
add_avonet(): Add bird morphology and migration (AVONET)
add_baseflor(): Add plant traits from Baseflor (Catminat / Julve)
add_col_info(): Add COL-specific columns
add_common_names(): Add common (vernacular) names
add_conservation_status(): Add conservation status
add_data(): Add custom data by taxonomic matching
add_diaz_traits(): Add seed mass and plant height (Diaz et al. 2022)
add_ecoflora(): Add British plant traits from Ecoflora
add_eive(): Add EIVE ecological indicator values
add_elton_traits(): Add diet, foraging, and body mass (EltonTraits 1.0)
add_fishbase(): Add fish traits (FishBase)
add_fish_traits(): Add freshwater fish morphological traits (FISHMORPH)
add_floraweb(): Add German plant traits from FloraWeb
add_fungalroot(): Add mycorrhizal type from FungalRoot
add_fungal_traits(): Add fungal lifestyle and trait data (FungalTraits)
add_funguild(): Add fungal functional guild data (FUNGuild)
add_gbif_info(): Add GBIF-specific columns
add_glonaf(): Add naturalized alien flora status (GloNAF)
add_hybrid_info(): Add hybrid parent and type information
add_invasive_status(): Add invasive species status
add_leda(): Add plant traits from LEDA Traitbase
add_leptraits(): Add butterfly traits (LepTraits)
add_lizard_traits(): Add lizard life-history and ecological traits (Meiri 2018)
add_pantheria(): Add mammal life-history traits (PanTHERIA)
add_pignatti(): Add Italian plant traits from Pignatti (on demand, via TR8)
add_qualifier_info(): Add qualifier information
add_wcvp(): Add WCVP native range status
add_wfo_info(): Add WFO-specific columns
add_woodiness(): Add woodiness classification
cite(): Cite data sources used in a taxify result
export_data(): Export a taxify result to file
list_enrichments(): List available enrichments
lookup_genus(): Look up a genus in the register
print(<taxify_result>): Print a taxify_result
summary(<taxify_result>): Summarise a taxify_result
taxify(): Match taxonomic names against local backbone databases
taxify_clear_cache(): Clear all cached backbones
taxify_data_dir(): Get the taxify data directory
taxify_download(): Download a backbone database
taxify_download_enrichment(): Download one or more enrichment .vtr files
taxify_download_vtr(): Download a taxify backbone
taxify_example_data(): Path to the bundled example database
taxify_load_register(): Load the unified genus register into memory
taxify_long(): Reshape grouped enrichment columns to long format
taxify_refresh_manifest(): Invalidate the session manifest cache
taxify_register_coverage(): Show backend coverage for a genus