Add phytoplankton cell metrics (Rimet & Druart)

Joins cell-level morphometrics for temperate-lake phytoplankton to a taxify() result by accepted_name.

Usage

add_rimet_phyto(x, cols = NULL, verbose = TRUE)

Arguments

x: A data.frame returned by taxify().
cols: Which columns to attach: NULL (default) the curated set, "all" every column the source carries, or a character vector of names. See enrichment_cols.
verbose: Logical. Default TRUE.

Value

The same data.frame with numeric columns rimet_phyto_cell_length_um, rimet_phyto_cell_width_um, rimet_phyto_cell_thickness_um, rimet_phyto_cell_surface_area_um2, rimet_phyto_cell_biovolume_um3.

Details

Source: Rimet & Druart (2018) phytoplankton metrics database (Zenodo, CC-BY 4.0).

References

Rimet F, Druart JC (2018) A trait database for phytoplankton of temperate lakes. Zenodo. doi:10.5281/zenodo.1164834

Examples

if (FALSE) { # \dontrun{
taxify("Asterionella formosa", backbone = "gbif") |>
  add_rimet_phyto()
} # }