Add Collembola traits (Lu et al. 2025)
Source:R/add-betsi-collembola-traits.R
add_betsi_collembola_traits.RdJoins per-species springtail functional traits to a taxify() result by
looking up accepted_name. Output columns are prefixed betsi_ct_.
Arguments
- x
A data.frame returned by
taxify().- cols
Which columns to attach:
NULL(default) the curated set,"all"every column the source carries, or a character vector of names. Seeenrichment_cols.- verbose
Logical. Default
TRUE.
Value
The same data.frame with additional columns:
- betsi_ct_body_length_mm
Maximum body length (mm).
- betsi_ct_antenna_body_ratio
Antenna to body length ratio.
- betsi_ct_ocelli_number
Number of ocelli.
- betsi_ct_furca
Furca (springing organ) development.
- betsi_ct_pigment_scaled
Pigmentation (scaled).
- betsi_ct_reproduction
Reproduction mode.
- betsi_ct_stratification_scaled
Vertical stratification (scaled).
- betsi_ct_trophic_position
Trophic position.
- betsi_ct_life_form
Life form (after Potapov et al. 2016).
Details
Source: per-species Collembola traits from Lu et al. (2025), Appendix S1. The
morphological traits (body size, antenna/body ratio, furca, pigmentation,
ocelli, reproduction) are derived from the BETSI database (Pey et al. 2014);
vertical stratification and trophic position were measured in that study and
the life form assigned after Potapov et al. (2016). Coverage: 26 species.
Body length is also available through add_trait()("body_length").
References
Lu J-Z et al. (2025) Mixed forests with native species mitigate impacts of introduced Douglas fir on soil decomposers (Collembola). Ecological Applications 35:e70034. doi:10.1002/eap.70034
Examples
if (FALSE) { # \dontrun{
taxify("Isotoma viridis", backbone = "gbif") |>
add_betsi_collembola_traits()
} # }