Add bryophyte traits (Bryophytes of Europe Traits)

Joins species-level bryophyte traits to a taxify() result by looking up accepted_name.

Usage

add_bet(x, cols = NULL, verbose = TRUE)

Arguments

x

A data.frame returned by taxify().

cols

Which columns to attach: NULL (default) the curated set, "all" every column the source carries, or a character vector of names. See enrichment_cols.

verbose

Logical. Default TRUE.

Value

The same data.frame with additional columns:

bet_growth_form

Growth form (acrocarpous/pleurocarpous/thalloid/...).

bet_life_form

Life form (cushion/mat/turf/weft/...).

bet_life_strategy

Life strategy (During).

bet_sexual_condition

Sexual condition (monoicous/dioicous).

bet_shoot_size_mm

Mean shoot size (mm).

bet_generation_length_y

Generation length (years).

bet_spore_diameter_um

Mean spore diameter (micrometres).

bet_ind_light

Ellenberg light indicator value.

bet_ind_temperature

Ellenberg temperature indicator value.

bet_ind_moisture

Ellenberg moisture indicator value.

bet_ind_reaction_ph

Ellenberg reaction (pH) indicator value.

bet_ind_nitrogen

Ellenberg nitrogen indicator value.

bet_substrate_soil

Occurs on soil (0/1).

bet_substrate_rock

Occurs on rock (0/1).

bet_substrate_bark

Occurs on bark (0/1).

bet_substrate_deadwood

Occurs on deadwood (0/1).

bet_epiphyte

Epiphytic (0/1).

bet_redlist_category

IUCN European Red List category.

Details

Source: Bryophytes of Europe Traits (van Zuijlen et al. 2023, EnviDat, CC BY-SA 4.0). Coverage: ~1.8k bryophyte species.

References

van Zuijlen K et al. (2023) Bryophytes of Europe Traits (BET): a fundamental dataset for European bryophyte ecology. EnviDat. doi:10.16904/envidat.348

Examples

if (FALSE) { # \dontrun{
taxify("Abietinella abietina", backbone = "gbif") |>
  add_bet()
} # }