Joins clonal growth, bud-bank and lifespan traits of the Central European
flora (Klimesova et al. 2017) to a taxify() result by looking up
accepted_name. Source records are collapsed to the binomial, so
infraspecific rows are aggregated to the species (numeric traits by median,
nominal traits by mode).
Arguments
- x
A data.frame returned by
taxify().- cols
Which columns to attach:
NULL(default) the curated set,"all"every trait the source carries, or a character vector of names. Seeenrichment_cols.- verbose
Logical. Default
TRUE.
Value
The same data.frame with additional columns. The default set:
- clopla_clonal
Clonal growth present.
- clopla_clonalindex
Clonal index.
- clopla_woody, clopla_annual, clopla_monocarpic, clopla_polycarpic
Growth-form and life-cycle flags.
- clopla_persistence
Persistence of the clonal connection.
- clopla_offspring
Offspring produced per parent shoot per year.
- clopla_spread
Lateral spread.
- clopla_BBsize, clopla_BBdepth
Bud-bank size and depth.
- clopla_finalCGO
Final clonal growth organ.
cols = "all" attaches every trait the source carries (29 in total: the
remaining bud-bank counts by depth class, root-derived bud banks,
branching, cyclicity and dispersibility), with codes kept verbatim.
Details
2,909 species of the Central European flora.
This source states no licence – it is an Ecological Society of America data
paper, free to use with citation – so taxify ships no pre-built copy of it.
The first call builds it from the original source on your own machine, which
requires the taxifydb package (remotes::install_github("gcol33/taxifydb")).
taxify redistributes none of the data. Cite Klimesova et al. (2017) when you
use it.
References
Klimesova J, Danihelka J, Chrtek J, de Bello F, Herben T (2017) CLO-PLA: a database of clonal and bud-bank traits of the Central European flora. Ecology 98:1179. doi:10.1002/ecy.1745
Examples
if (FALSE) { # \dontrun{
# Builds the enrichment on first use (needs taxifydb).
taxify("Trifolium repens", backbone = "gbif") |>
add_clopla()
} # }