Joins clonal growth, bud-bank and lifespan traits of the Central European
flora (Klimesova et al. 2017) to a taxify() result by looking up
accepted_name. Source records are collapsed to the binomial, so
infraspecific rows are aggregated to the species (numeric traits by median,
nominal traits by mode).
Arguments
- x
A data.frame returned by
taxify().- cols
Which columns to attach:
NULL(default) the curated set,"all"every trait the source carries, or a character vector of names. Seeenrichment_cols.- verbose
Logical. Default
TRUE.
Value
The same data.frame with additional columns. The default set:
- clopla_clonal
Clonal growth present.
- clopla_clonalindex
Clonal index.
- clopla_woody, clopla_annual, clopla_monocarpic, clopla_polycarpic
Growth-form and life-cycle flags.
- clopla_persistence
Persistence of the clonal connection.
- clopla_offspring
Offspring produced per parent shoot per year.
- clopla_spread
Lateral spread.
- clopla_BBsize, clopla_BBdepth
Bud-bank size and depth.
- clopla_finalCGO
Final clonal growth organ.
cols = "all" attaches every trait the source carries (29 in total: the
remaining bud-bank counts by depth class, root-derived bud banks,
branching, cyclicity and dispersibility), with codes kept verbatim.
Details
2,909 species of the Central European flora.
This source states no licence. It is an Ecological Society of America data
paper, free to use with citation, and taxify ships no pre-built copy of it.
The first call builds it from the original source on the user's machine, which
requires the taxifydb package (remotes::install_github("gcol33/taxifydb")).
taxify redistributes none of the data. Cite Klimesova et al. (2017) for
the data.
References
Klimesova J, Danihelka J, Chrtek J, de Bello F, Herben T (2017) CLO-PLA: a database of clonal and bud-bank traits of the Central European flora. Ecology 98:1179. doi:10.1002/ecy.1745
Examples
if (FALSE) { # \dontrun{
# Builds the enrichment on first use (needs taxifydb).
taxify("Trifolium repens", backbone = "gbif") |>
add_clopla()
} # }