Format multi-species occupancy data

Format multi-species occupancy data

Usage

tobs_format_ms(
  y,
  occ.covs = NULL,
  det.covs = NULL,
  coords = NULL,
  species_names = NULL
)

Arguments

y

3D array (n_sites x max_visits x n_species) or named list of matrices.

occ.covs

Data.frame of site-level covariates.

det.covs

Named list of detection covariates.

coords

Optional n_sites x 2 coordinate matrix.

species_names

Optional character vector of species names.

Value

An tobs_data object with multi-species structure.

Examples

sim <- simulate_ms_occu(N = 40, J = 3, n_species = 4, seed = 1)
dat <- tobs_format_ms(sim$y, occ.covs = sim$data,
                      species_names = paste0("sp", 1:4))
dat$n_species