Format occupancy data from matrices/lists

Format occupancy data from matrices/lists

Usage

tobs_format(y, occ.covs = NULL, det.covs = NULL, coords = NULL, species = NULL)

Arguments

y

Detection history matrix (n_sites x max_visits) or 3D array.

occ.covs

Data.frame of site-level covariates, or named list.

det.covs

Named list of detection covariates. Each element is a vector (length n_sites, constant across visits) or matrix (n_sites x max_visits).

coords

Optional n_sites x 2 coordinate matrix.

species

Optional character or integer species identifier.

Value

An tobs_data object.

Examples

sim <- simulate_occu(N = 50, J = 3, seed = 1)
dat <- tobs_format(sim$y,
                   occ.covs = sim$data[, c("occ_cov1", "occ_cov2")],
                   det.covs = list(det_cov1 = sim$data$det_cov1))
dat