Read flag output written by flag_occurrences()

Usage

read_flagged(x)

flagged_table(x)

Arguments

x: An occ_flagged object or the output directory it describes.

Value

The occ_flagged metadata (read_flagged()), or a vectra_node over all parts (flagged_table()), to be used with vectra verbs and vectra::collect().

Examples

x <- data.frame(gbifID = 1:4, kingdom = c("Plantae", "Plantae", "Animalia", "Animalia"),
                decimalLongitude = c(12.58, 0, 16.37, 2.35),
                decimalLatitude = c(55.67, 0, 48.21, 48.85))
input <- file.path(tempdir(), "occurrence.csv")
utils::write.csv(x, input, row.names = FALSE)
out <- file.path(tempdir(), "flags")
flag_occurrences(input, tests = c("zero", "capital"), out = out, keep = "kingdom",
                 verbose = FALSE)
f <- read_flagged(out)
f
vectra::collect(flagged_table(f))
unlink(c(input, out), recursive = TRUE)